I have just seen this thread. I have worked with both P3 and Athlon TB retros and I do own pretty much the machine you consider:
I have a QDI Kinetiz 7E-A, with a V5 5500 and an unlocked Athlon 1400 as well as other more modern Chips, like Duron 1800 and Geode.
In a nutshell: Why would you want to do it? I've tinkered around with it for quite some time, but then I pretty well abandoned the project.
The Athlon draws power like crazy. There is no really quiet solution possible. At the same time, it is pretty inconvenient to throttle it down. You would need a board with bios multi configuration, which my Kinetiz doesn't offer. I could wire some jumperes to switch to 500 MHz, but where is the gain?
On the other hand, what is there, that a P3 900 at 100 or 112fsb can't handle?
Perhaps I just have the wrong board, but in my search for an all in one, I always return to the option to swap in an unlocked P2. With the Athlon, I found no way to go under 500 MHz in pure DOS.