First though: why on earth pair a V5-5500 with a Prescott?
They're hardly from the same period, and if you don't care about that, why not go for a Northwood, which:
- is at least as fast as Prescott
- runs cooler
- has far wider choice of motherboards when it comes to AGP
But if you really want to team the two up, you need a Prescott-supporting So478 board with universal AGP, so 4x (2.0). It's the chipset that determines the AGP version, so you'll want something from Intel i845 or i850 series, SiS 645 or 650, Via P4X266, ALi Aladdin-P4 or ATi RS2xx - and then find a board with one of those, 3.3V AGP and Prescott support. That's going to be a challenge, as these are 2000-2002 era chipsets and Prescott wasn't launched until 2004... a quick check of Asus and MSI support sites shows that their flagship models with the latest of these chipsets don't do Prescott (BIOS limitation and probably TDP too).
Asrock is the only manufacturer with multiple boards that will do stuff like this, take a look here:
https://www.asrock.com/mb/SiS/GE%20PRO-M2/index.asp#CPU
https://www.asrock.com/mb/VIA/M266A%20R3.0/index.asp#CPU
(note: 2.4GHz Prescott is supported, 3.06GHz not, almost certainly due to TDP)
(also note: Asrock's Intel 845x chipset boards do AGP 4x, but only at 1.5V, so no V5 possible)