Atlantis : The Lost Tales shipped with a DOS and Windows version on the same disc. The DOS version is pretty finicky and I've seen it lock up on multiple setups before even reaching gameplay.

Tetris, Chip's Challenge and Pipe Mania (of course!)
Descent II
Space Hulk/Space Hulk: Vengeance of the Blood Angels
Star Wars Chess
The 7th Guest
Su-27 Flanker
Deja Vu
Capitalism/Capitalism Plus
Flying Corps/Flying Corps Gold
King's Quest V
Earth 2140
Battle Chess
Battle Chess Enhanced
Virtual Pool
Star Wars: X-Wing
Star Wars: TIE Fighter

Does anyone know if Magic Boy got an actual Windows version, or if this release was just the DOS version with a Windows installer?

The Last Express: The Windows and DOS versions of The Last Express seem almost identical at first glance. Mouse movement is nicer under Windows, and the game can be set to higher refresh rates under Windows than in DOS.
Links LS 1997: The Windows version of Links LS having issues on Windows 98.

The settlers (1), picked it up yesterday for a dollar, never tried it but it said windows 95/98.

Joakim wrote on 2021-11-14, 09:02:

The settlers (1), picked it up yesterday for a dollar, never tried it but it said windows 95/98.

I am pretty sure it is still just the DOS version running under Win9x. At best they packaged a Windows-based installer.

lands of lore 2 dos software/3dfx version and directx/windows version

[*]Lots of dos game between 1993 and 1996 had win95 version

dr_st wrote on 2021-11-14, 09:20:

Joakim wrote on 2021-11-14, 09:02:

The settlers (1), picked it up yesterday for a dollar, never tried it but it said windows 95/98.

I am pretty sure it is still just the DOS version running under Win9x. At best they packaged a Windows-based installer.

Yeah you are right it was the DOS version with 490 mb of demos and video clips. 😁

Assault Rigs 3D Rage Edition

Prisoner of Ice has 2 versions, a DOS vga/svga and a native Windows which is DOS compatible (the svga executable is on the disc).

The original Panzer General game had a release with the DOS and Windows 95 versions (possibly even a MacOS version) on the same CD. The Windows version pre-dated DirectX.

Jeff Vavasour wrote both the DOS/Win3.1 and Win95 releases of Williams Arcade Classics for Digital Eclipse. The application is an emulation of arcade games including Joust , Defender, Robotron, Sinistar, Stargate (Defender II) and Bubbles. The Windows 95 release has the distinction of being one of the few games that used DirectX 1.

DOS/Win3.1: http://www.vavasour.ca/jeff/games.html#wacdos
Win95: http://www.vavasour.ca/jeff/games.html#wac95

MechWarrior 2

robertmo wrote on 2021-11-11, 14:51:

let's make a list

I kind of started doing that a while ago (and mentioned it in a different topic here):
https://dosgames.com/forum/viewtopic.php?f=15&t=22637