Nothing helped. I tried clearing CMOS taking the battery off, I tried every bios setting, I tried changing the psu to see if that helps and nothing. I tried it in the three PCI slots too. It does work ok with my Trident 9680, but if I put the TNT2 and the Trident at the same time with the CRT connected to the Trident, the system wont display anything too. It boots, I hear the hdd loading windows but no display. I also found that the power_good signal cable from my original AT psu was burning. I tried again with the other AT psu that I have for spare and everything is fine. It seems that this system is starting to show aging issues. But every stress test I ran were ok. So I don't know why the hell this isn't working. The TNT2 is working like a charm in my Deskpro EN as I said.
Regarding the Voodoo 2:
I can put those pins in place. But there is a missing pin and I have no room in the chip to place a wire. One solution could be drilling something like 0.5 - 1 milimeter the chip to make place and insert a thin pin and join it with what remains of the original pin. Another solution could be replacing the entire chip, but It's 99.99% unlikely finding a spare chip or another blown card at decent price in here.
And the Voodoo 1 still needs replacing some caps. I'm not possitive at all, but besides the issues with the TNT2 and my retro rig, I bought a bunch of working stuff at really low price. Sure, It will be a pity if I can't fix them. But they were something like a gift so I can't complaing too much about it.