Wow, that's some kind of question you don't see every day! I'm no owner of a Gotek emulator myself, but I have an idea.
You can try to open those images (*.img or *.ima) with WinImage and then change the floppy format.
But becareful, this can render the image useless in some cases. So better make several backup copies.

Oh, and welcome to Vogons! 😀

Have you bought an HxC license and isntalled the firmware?

Without doing that, you're going to be limited to using the Gotek application to add disk images, and you will only have 1.44mb support.

Cant give you an answer but can give you another angle if you still have the original disks.
If you put the FDD and gotek in the same PC you could always diskcopy A: to B:
I'm just not sure of any 1:1 disk imaging programs

(assuming the original drive/disks are standard 1.44mb)

Yeah, that's indeed a good idea! This should work well with DOS style floppies. And if the disks are in another format, there's still hope.
I know of an old copy utility, QCopy, which had the ability to reformat the floppy format on-the-fly.

Hmm... I did read the gotek had internal storage. I will try that and with the partitioned thumb drive. Im fairly certain the SCP will write my images to it. Thanks for the advice I will reply back with what I find

As for opening the image... I havnt found anything that can do so. I get a lot of "Null Sized DOS Image" and error's opening. I can write the images back onto fresh disk's and they work fine

Welp no luck. I was able to write the image through the gotek but it wouldn't boot. Read some more and I definitely need the gotek that supports image mode for non-dos disks. Thanks for the ideas!

The magic designation for the gotek emulators having the image mode is "-DL". So for example SFR1M44-FU-DL. For anyone else looking...