allright, back at the office for some more testing 😀
First of all, I found this pinout here

So I measured a VCC pin on the socket (K2), on the default 5v setting I get 5v and on the new 3.3v setting I get 3.3v 😀 did this so I can be 100% sure the mod works and the cpu really gets 3.3v .
Next is a good pic of the area:

I have tried all possible combos with JP24 and the JP1/2/4 block, and I found that it outputs 4.19v when there is no jumper installed in any pin. Measured the socket pin and it was 4.19v as well. So for my 486SLE mobo the jumper settings become:
JP1/2/4 ON , JP24 1-2 = 5v
JP1/2/4 OFF , JP24 1-2 = 3.3v
JP1/2/4 OFF , JP24 OFF = 4.19v
Next is the TC29 and TC30 capacitor pads. Their (+) point measures the LT output, either 5v or 3.3v . Do you think I should add them? 2 more 106F tantalum caps? Maybe they help in stability when 3.3v is used..?
And I had a look on the pad behind the LT , it's not conencted to ground or anything, infact it seems it's just a tinned pad on the pcb , clearly made to be used as a heatsink... I'll just bolt the LT there 😀