use an ohmmeter, check the battery's negative terminal's continuity to ground on the board
if it does have that, take the Clear CMOS jumper off but note which 2 pins are used when the battery is connected and the CMOS is NOT in clear mode. With the jumper off, test which of those 2 pins does NOT have continuity to the battery positive terminal (the one that goes to the battery goes to the internal battery and that's not what we want - we want the pin that goes back to the flash). Hook your external battery up between that pin and ground.
The other pin (that you use to clear it) may be ground, or you can otherwise use nearly any ground on the board. The resistor may be in the way though. The resistor is almost definitely between the "clear" pin and ground, to limit the current when discharging the supply (which likely has a bypass capacitor or two on it as well), so you'd want to find a different ground without a resistor in the way.
If you do it this way, your new clear CMOS method will simply be to pull the battery from that connector (to speed up the clearing, you could then put the jumper on the clear pin at that point, as you would when using the internal battery)
If the battery doesn't have continuity to ground, ignore this post, though it probably will.
Yes, I always ramble this much.