Some boards make this sound when the fan or temperature alert triggers. Can you get a picture on your monitor? If yes, check out the health status in the BIOS setup. Make sure there is no fan alert activated where no fan is connected to the board.
When using a fan, a short beep like this can happen while the fan starts up spinning.
DOS-PC: DFI k6bv3+, Pentium 200mmx, 64 MB RAM, Terratec Maestro 32 sound card, Roland MT-32 + SC-155, Winner 2000 AVI 2MB, Voodoo 1, Win98SE
Windows PC: GigaByte GA-MA790GPT, Phenom II X4 905e, 12 GB RAM, M-Audio Delta 44, NVidia 1060 6 GB, Win7 pro x64