I haven't scratched around much, but just by looking at the chipset numbers and what they supported, my guess would be that they had different target markets (business versus consumer, feature wise, etc.).
This is similar to your 430HX & 430VX Pentium 1 chipsets and your 440EX & 440BX Pentium II chipsets (which were also released at the same time, respectively).
From what I could gather the Saturn II chipset was meant to "fix" problems with the earlier Saturn (420TX) chipset.
The Asus PVI-AP4 used the 420EX (Aries) chipset and then you had the Asus PCI/I-486SV2 that used the 420ZX (Saturn II chipset) - this should help you to track down some reading material and opinions on the performance of the motherboards and their related chipsets.
Doesn't seem like the former was a very popular motherboard: ASUS PVI-486AP4 486 board any good?
Seems like they used the Aries chipset for "combo" VLB/PCI motherboards (probably because the chipset could support up to 50 MHz FSB), whereas the Saturn II chipset was mostly used only for PCI implementations (due to only supporting a maximum FSB of 33 MHz).